I think if it were software related it would be phrased differently, or it even won't be mentioned (how often is software mentioned in military project updates anyway? Usually it's in concert with some significant hardware change)
What you're saying sounds right. Maybe I'm trying to temper my expectations.
On that note, is it possible that the eventual aft section would be a little shorter? As others here have pointed out before, the join between the nozzle and the bottom aft is all sorts of awkward, especially for a stealth fighter. The rear tapers up in this nice shallow angle, when suddenly... Woah! Engine nozzle! When looked at from the side, the engines even jut out a little bit, peeking around from behind the ventral fins. It just looks sloppy, and doesn't match the careful shaping of the rest of the plane. That, and the huge actuators for the flaps and such both look really odd to me.
It's always amusing to see mentions of "Major modifications" be met with what's basically a wish list from the various forumites.
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