Well if the missiles have radar sensors, they will choose their own targets, just need to be in range of the sensors in the terminal phase. Initial guidance can be done by spotting and satelittes to have the position of the fleet. They will need to be in great number to saturate air defences but who knows, that type of top attack are an unknown quality presently.Well supposedly one of the main challenges of establishing communication with HGV or MaRV is getting around the ionised air. Chinese method to get around this is with relay HALE drones. Available information is built on speculation though. Drones and satellites perform targeting and communication data.
How does another ship act as spotter and relay both targeting information and guidance? Considering the US would no doubt sink any and all vessels acting in this role even if they pretend to be "civilian". In protecting her carrier fleets from Iranian ASBMs, I'm pretty sure they'd issue some warnings to stay away or be sunk.
US carrier fleet have quite an array of systems against missiles threat. Any country that do an attack like that will be in a world of pain soon after it.
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