Indeed, if this aircraft is made to go fast, they need to optimize airflow for each engine.
Even more if it can use different thrust and thrust vectoring for maneuvering or energy generation. A combined intake would mess things up a lot with an engine spooling slower giving more air to other. It would need complex movable internal ramp for each engine to compensate.
An adaptive cycle engine would need movable ramps anyway to switch airflow between modes?
You could have different modes where 3 or 2 or even 1 engine is operating.
My guess is that the maximum airflow requirement is with 3 engines in afterburner.
But in subsonic cruise mode, with say 2 or even just 1 engine operating, the airflow is still being pushed by the compressor fan (presumably powered by electricity from the combusting engines) through the non-combusting engines and generating additional thrust.
So I think it's too early to say combined intakes are suboptimal.
We'll just have to wait till pictures come out