New APS with infrared search and millimeter radar according to Hongjian it can stop top attack missile like Javelin or Spike
Most APS Equipped armor have some consideration for Top attack missiles. Either a Soft kill APS partner or the ability to traverse the APS launcher. Generally the preferred though it to Soft kill as the ATGM requires a guidance to home in for the kill.
That would further highlight the need for armour to have organic infantry support, especially in urban battlefields.
OF Course APS system can have issues with Organic infantry. These systems often employ counter measures that are based on Fragmentation or Explosive effects making them highly effective anti personal weapons.
In the future, as such systems proliferate, we might see much greater co-ordination between ATGM teams and snipers/general infantry, with the latter using small arms to take out the sensors on the APS do allow the missile teams to hit the tanks after.
Or use of more ATGM to swarm attack the Target. because of the Way these systems are built and operate they have a limitation on the number of countermeasures that normally maxes out at 2-4 covering an arc that is either a quarter or half the vehicle. I mean if you are dealing with a T72 upgraded with Arena. Once the first countermeasure has been fired that side of the Tank is open for attack this is a limitation of Fixed counter measure systems, They are basically a outgrowth of Reactive armor tiles with the same flaw Once fired that protection is gone.
Trophy takes a couple seconds to reload and can only have 2 launchers with 4 countermeasures and because of the Way it works you cannot allow overlap due to the fact that the system can damage the Tank as such behind the launcher there is a built in metal shield to stop "Back Splash" from the countermeasure.
Iron fist, Akkor and the KAPS have 2 countermeasures per station in theory though each station can cover a 360* arc of the host vehicle but in practice military vehicle roof lines are a busy place often with accessory weapons, crew hatches, commander Copulas, Optics and other goodies that can get in the way of a APS system or that you don't want open when firing off a Countermeasure.
These as well as other issues create holes in the protection optimally these holes line up with the strongest parts of the vehicle. Like the reason the Abrams Tusk doesn't add ERA to the front of the tank, If you already have the Thick composite armor and DU Mesh there to take an attack.
The only system Anywhere near reality that in theory might be able to take more than a swarm of ATGM fired on one side would be either Raytheon Quick kill or SAAB LEDS as both used a VLS type launcher system firing a missile to intercept and LEDS 150 ( other versions may very) atleast has 6 countermeasures per launcher.