Smooth bore guns are also less accurate, especially at longer ranges.
The more accurate the gun, the greater the effective combat range. The 2A38M on the Tunguska and Pantsyr only has an effective combat range of 2km while the gun has a max slant range of 4km. The 2A38M is rifled, so I would expect a smooth bore to have a lower effective range still.
The Oerlikon 35 mm, on which the Type 90 35mm is based and which I think is the bases for the 35mm used here on the PGZ-07, has an effective range of 4km and slant range of 7km.
Now, for the Tunguska or Pantsyr, with their 2km engagement range and 960m/s muzzle velocity, time from firing till impact is normally less than 2 seconds and they are radar guided active systems, so they never really have the option of engaging a target without giving it prior warning and the range is so low that there is a good chance that the target will get hit no matter what kind of evasives it pulls. Since they never intend to engage passively, the Tunguska and Pantsyr looses nothing and only benefits from having missiles as well.
The PGZ-07, with its 4km effective range and 1175m/s muzzle velocity need to lead their targets by nearly 4 seconds when engaging at max range. That is effectively double the lead time for the Tunguska and Pantsyr, so the target will have a vastly greater chance to evade the shot if it was moving violently and unpredictable.
That is almost certainly one of the main reasons why there is a passive IR sensor on the PGZ-07, and may well be a reason for not installing missiles for fear that enemy MAWS would pick it up and spoil the shot the guns as a result.