The outside vertical stabilizers are also pretty different, wonder what went into that decision.
Originally E-2’s rotodome was designed to be able to be lowered on its pylon to reduce overall stowage height. The vertical stabilizer on the E-2 is shorter on top and longer on the bottom so the tops of the vertical stabilizer is at the same level as top of the rotodome when the latter is in its lowered position.
if the KJ-600 doesn’t have so stringent a stowage height requirement as the E-2, so it can’t lower its rotodome, then there is no point to restrict the heights of vertical stabilizer like the E-2 design. So it needn’t be shorter above the horizontal stabilizer then below it.