I suppose it depends on how advanced the FBW and autopilot systems are and how much control you want to give over to it.
I think it should be perfectly possible to design the FBW and have an autopilot setting where the plane automatically aligns its wings to be level with the carrier deck if it doesn't receive overriding direct pilot input.
In order for this to work, you first need a stick with force feedback, which can be partially disabled and set on the fly.
That means you need the ability to de-couple the stick from the position of the plane, so that you can leave the stick in the neutral position in the roll axes while retaining full pitch control so that the stick doesn't move in the roll axes even if the plane itself does.
That will allow the pilot to only need to focus on pitch, yaw and airspeed, taking the most difficult, roll control, out of his hands.
Its easy enough to set it so that moving the stick in the roll axis, out of the neutral zone will override the autopilot, at which point the pilot will again have full control authority without having to take his hands off of the stick or throttle or even push a button.
For quick movement inputs from the pilot at and after this point, the FBW would retain full responsiveness of the stick to give the pilot maximum control. Once pilot input speed falls below a certain degree/second threshold, the FBW could introduce some slack into the stick responsiveness to seamlessly re-allign the stick position with the plane attitude again.
Or at least that's how I would design the system as the best compromise between automation and responsiveness.
You're both right of course, it all passes through the FCS, all the flight instrumentation feeds into the FCS roll, yaw, angle of attack and I would say the antennae are actually feeding that data back and forth to a radio transmitter on each side of the ship. The aircraft in fact follows the roll of the ship with a rate of roll and feedback, once the roll of the ship proceeds to reverse as the natural righting of the hull, the aircraft FCS is instantly aware of same. So the important aspect is that the aircraft/ship are interfacing with one another, the pilot can relax and monitor adjust pitch or roll in minutitae knowing that the auto-land has things well in hand.
In the F-35 the flaperons are added and taken away for glide path control, and I'm sure the J-15 has a very intuitive system as well. Good call Wolfie, and good comments Quickie, each of you would make a fine pilot! you are ahead of the game. Come on over and we'll let you fly that little red Ercoupe, you would love it.