Its worth noting there are a fair few pictures also showing 039/G class submarines underway with even trim. So I wouldnt say it is standard for them to be trimmed bow up.
Generally speaking all modern submarines are rather disagreeable sea boats surfaced, as the hulls are highly optimised for underwater speed/low submerged drag, and particular aspects of individual designs may increase that tendency further. Older boats including the Romeo/033/035 series in their "bones" still differed somewhat in that regard, despite being post WW2 designs.
I am speculating here but it may be that the 039 hull design does provide notably improved seakeeping surfaced with the bow trimmed up, and that 039A/B/C, somewhat like Russian Kilo etc do not benefit from any such measures underway, rendering the issue moot.