They really don't. From this link that you posted earlier , I quoteI was reading "Type 346 inherits the design feature of the prototype of grouping four transceivers into a 100W peak power T/R module with its own power source." as if the 100W per module was for the production model.
Alternative explanation might be that the "peak power' for AESA and PESA might not mean the same. It could be peak power at some nominal duty cycle which is not specified. If your read the article about the NIIB AESA: you can see that in the low duty cycle regime the L-band power transistors can exceed 500W. Also for Dutch L-band power transistors.
I think the Japanese had AESA radars fielded back then. The US fielded the PAVE PAWS AESA radar in the early 80s: . That behemoth had "only" a 320W peak power per T/R module for a total peak of 580kW per face. Its duty cycle was quite a bit higher than SPY-1, at 18%.
Could also imply average, instead of peak power.
The original SPY-1A version reportedly has a peak power of up to 5 MW and an average power of 32 kW. The SPY-A’s transmitter output is provided by 32 crossed field amplifiers (CFAs), each with peak power of 132 kw, which would give a combined peak power of 4.2 MW. This seems to indicate that reported peak and average powers for the radar are the transmitter power, not the power actually emitted, which will be less due to losses between the transmitter and antenna.
The author suspected that loss. That loss includes "insertion loss" introduced by the phase shifter, plus any other loss due to the wires or wave guides in between. The actual insertion loss of SPY-1B (Lockheed Martin 2006) according to this report "" (PDF file) by USN, is from -1.45 to -1.35 dB which is 77% to 71% loss. If the 77kw figure is right, and is the transmitter power as the quote above, that means less than 58kw to 59kw is emitted out from the antenna.
When talking about AESA, the transmitter is the antenna, nothing between it and the space, so what ever number is listed is the power emitted. And that 125kw even if true, is from 1990s, while the number of SPY-1B is 2006.