Fair point, three WS-15s provide about 40% more thrust than two turbocharged F135s.
It's not just about thrust, it is also about bypass ratio and exhaust velocity.
That said, this three engine arrangement just seems bizarrely complex.
It's probably simpler than developing an engine that is able to meet all of the requirements for J-36 in a two engine configuration, in a manner which is timely and effective.
These three engines will burn a ton of fuel.
Three engines will burn more fuel than two engines of the same model.
However an aircraft with three engines can also be heavier than an aircraft with two engines of the same model, thus carry more fuel.
It may well be that an aircraft with three engines of the same model can achieve greater range than an aircraft with two engines of the same model, because the two engine design will inevitably have a lower MTOW.
The dorsal intake will increase drag and make stealth more challenging.
You're really looking at things from an individual perspective here.
A dorsal intake will increase and compromise signature reduction relative to having no dorsal intake yes -- but no dorsal intake means either no third engine (thus having a smaller aircraft), or forcing your two side mounted intakes bigger, which is something perhaps the airframe is unable to accommodate with adverse consequences to signature reduction and drag (compared to having a dorsal mounted intake as a solution instead).
The third intake make the pilot's rear visibility (already bad with the J-36 cockpit) even worse. I guess rearward visibility isn't seen as an issue given that this thing will have a solid DAS capability and the aircraft will operate at stand-off ranges.
If the aircraft is in a position where they need the Mk1 eyeball to glance rearwards, then something has gone wrong.
Also, how will the dorsal engine affect air-to-air refuelling?
Air refuelling probes are usually mounted on the side, thus offset from the dorsal air intake.
X-47B uses a probe and has a single dorsal intake. I consider it a non-issue, and it's odd you would even raise it as if it is a genuine engineering conundrum.
KFX, the best way for you to approach the 3 engine matter, is to try to reverse engineer out the combination of compromises by first assuming the following conclusion:
"The three engine configuration for J-36 is the most effective and capable configuration for the mission that the PLA expects, and is irrespective of engine technology relative to the rest of the world".
From there, you can start to come up with reasons for yourself for why they've chosen the three engine, three intake configuration among the permutation of engineering decisions they've made.
Instead of "why would they choose a three engine design because of XYZ deficiencies," think and come at it from this angle "of course they would choose a three engine design, because of XYZ benefits".